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   &#160;<span id="projectnumber">2.x</span>
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<div class="header">
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<div class="title">DistanceCalculator Member List</div>  </div>
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<p>This is the complete list of members for <a class="el" href="class_distance_calculator.html">DistanceCalculator</a>, including all inherited members.</p>
<table class="directory">
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a00bdfa4cc790ce19056cf06894e205f4">A</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a721cb1b004a4d856515be5b8c4fc0fc4">aa_chars</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a7d15fa02f8da2455998c97b3c18d0bc0">alph_type</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#aba37861b27b2e9a8e12b0aea4fcb5c7c">AlphabetType</a> enum name</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#aba37861b27b2e9a8e12b0aea4fcb5c7cad0f2f6fb9391cbe99f3f7b9dc4cfd63a">amino</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a3103ea39f1b1dbdbb7e23afd2adbd959">calc</a>(int a, int b)</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a99279654c09ff392eed4cf5b03051158">convertedSequences</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a546dee19652efa8267f27b4baead4dfb">corr_type</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#affde42ac598a1597aba092e781de6609">CorrectionType</a> enum name</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#ab530628f3fb6f7e216ef6d378665e66a">COUNTS_MASK</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a9f70a25047b64665cb1ac392482df94f">DECOMPRESSED_GAPS</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a2a8861e559827f4a9324b854edc13e58">DistanceCalculator</a>(std::string **A, AlphabetType alphType, CorrectionType corrType, int numberOfSequences, bool useSSE)</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#aba37861b27b2e9a8e12b0aea4fcb5c7cafb040d095728a3f8116779a3cd63b2af">dna</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a1f57ec0ac50ea709a7a8c349167d6199">dna_chars</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#affde42ac598a1597aba092e781de6609a82d5f2ef688449e3584c82448b739b88">FastTree</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#ae6a08d5f607d2fab97983f956dcee6eb">gapInTheSequences</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a432c5d8e0379f014219ce28eb81945d5">GAPS_COUNT_MASK</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a852203aaa2f7eb7faf53cc52245244f1">getInverseAlphabet</a>(std::string alph, int length)</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#affde42ac598a1597aba092e781de6609aeb17fea69ad9aef888f2419a2814abf9">JukesCantor</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#affde42ac598a1597aba092e781de6609a08d9cb898efb2c44ad9fd7b09d6c7e50">Kimura2</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a42ec2af34a954839847fca06288c1aca">lengthOfSequences</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#aab6b17cfa53aa960ed4fcfadfb160408">newCalculation</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#affde42ac598a1597aba092e781de6609a4f1b606366478e0f0f4c8acd4de71583">none</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#affde42ac598a1597aba092e781de6609a5f3b3cb6619f0d29daf2ff29a772d93c">not_assigned</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#aba37861b27b2e9a8e12b0aea4fcb5c7ca36b2c09e572187e6f03fa8bde6fda574">null</a> enum value</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a0a797aedff55422df2d8dc526d397bcb">numberOfSequences</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#ac315efce21a47f3e77fb61ea933f930b">testDifferenceCluster</a>(int a, int b)</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a47d1216e0b5d0cbc662a7c151d283329">TRANSITIONS_MASK</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#ab1a3b734787d672be007ec68c1b48cd7">TRANSVERSIONS_MASK</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a68fa9153f40a2a4b67afb724eb8264aa">VALUES_0</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a6935cc06e8a5fbd492f39dae5363d7be">VALUES_1</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a1c75c34fd473c9b06536add609dc9904">VALUES_2</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#adcc6485001fef7a3e41224859103753e">VALUES_3</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a2d1c775e20f24225a31b05548b6b8e43">VALUES_4</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#a2bd93b7a5642f21d26ba73a866d4b025">VALUES_5</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a86d7a9392e657a3712692d81a616b413">VALUES_6</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#afbbc9af71772eb396f61bf24639c42f0">VALUES_7</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a61a73417e46e0c2b9a4d5d95a6ed4d81">x128</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr class="even"><td class="entry"><a class="el" href="class_distance_calculator.html#aa6b5621fcd3799f2b7e5840c75015c25">zero</a></td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
  <tr><td class="entry"><a class="el" href="class_distance_calculator.html#a937924271f1403a83408b4807589bd91">~DistanceCalculator</a>()</td><td class="entry"><a class="el" href="class_distance_calculator.html">DistanceCalculator</a></td><td class="entry"></td></tr>
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